Scaffold Ga0211638

Basic Information
Taxon OID	3300020448 Open in IMG/M
Scaffold ID	Ga0211638_10001069 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100000941 (ERX555919-ERR598954)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020448 Open in IMG/M

Scaffold ID

Ga0211638_10001069 Open in IMG/M

Source Dataset Name

Marine microbial communities from Tara Oceans - TARA_B100000941 (ERX555919-ERR598954)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

CEA Genoscope

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	12284
Total Scaffold Genes	40 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	17 (42.50%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (16.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

12284

Total Scaffold Genes

40 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

17 (42.50%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (16.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_112
Coordinates	Lat. (^o)	-23.24	Long. (^o)	-129.4851	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

TARA_112

Coordinates

Lat. (^o)

-23.24

Long. (^o)

-129.4851

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006793	Metagenome	364	Y
F012584	Metagenome	279	Y
F016820	Metagenome	244	Y
F047122	Metagenome	150	Y
F088913	Metagenome	109	N
F099447	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211638_1000106924	F047122	N/A	MKCPKCNKKAKASATKFVEYSHAQRRIRTCECGFRFTTYERIEVDKQDFGQHSKQKKKDFYKKVLKDLIEDLEGRTYLDKKEDFDL
Ga0211638_1000106925	F088913	N/A	MTVPSQPKYKVNDRVRIRQVLKTSNRHVMINGKYVSAKIRKGVIKEVTLKQNSCGAKIPHYQVLWDHQSRPSLVSQHRIELENEVSKM
Ga0211638_1000106926	F006793	GAG	MTNTRSTNEEKDQRINYAADELAKGKRAMDISKKLASKYNVSIQQARDYLRQAKPILTQSISPNDRAFIFSKVMSCLEQDRLDARKDENLKEQTRSTGGMVKMVSLLTSIDQVGSWDTARESEGDYLFRNFSEIARKKKKYADLDSLDNSTDSETPF
Ga0211638_1000106927	F016820	N/A	MTKKEFSYIVFSSSGDNVQEIHGVYKDLKGASYGAMSALSTLFPKHGDEAKIIRCEIISTEEAQIQYDKANPKDIFEKCEDDYCPMPTLKPQEVS
Ga0211638_1000106928	F012584	N/A	MKLKPKPYLPEDVYILSDEELPKEIHTDRFDKVMVFRKDIGWSVIPLKEVYTYFKHMKYTHWTFTPDTPYD
Ga0211638_1000106929	F099447	N/A	MSYQQTEGDKADEKLLRTLLSNKMLKKDADKIINHCFSDLIKWTYDDAVFQLTEIFKFTDQECELLLKEYDILSTTTEEITMNPAPNFNATTPRDVKDLAENLWQARKHISTAKKLISSTALTPDDYDNQESFQEAVVQRANVNFHFISITKYIDEMSEYTKGYMPQLRK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0211638_10001069

Overview

Ecosystem & Geography

Associated Families

Sequences