Scaffold Ga0211638_10000160

Overview

Basic Information

• Taxon OID: 3300020448
• Scaffold ID: Ga0211638_10000160
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000941 (ERX555919-ERR598954)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 29991
• Total Scaffold Genes: 37
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (51.35%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_112
• Coordinates
  • Lat. (^o): -23.24
  • Long. (^o): -129.4851
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033841	Metagenome / Metatranscriptome	176	N
F034215	Metagenome / Metatranscriptome	175	Y
F105367	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211638_1000016028	F034215	GGAGG	MPSKKSSRKRDEDGKFVSEKAIVSKLGVNEENPVPEKSGDVTTRHGSTIHYS
Ga0211638_100001603	F105367	N/A	MNHKEFFNVLIGNPPPEVELEIELKCREVQQLPDFVIKDYCCDLVKHVRLQDMLLMSALIKISDTETRNYHLERELRQYRKLQKQGFLGKVRYVLFGNTTKK
Ga0211638_1000016036	F033841	AGG	MEELKPETIKIVTPNPTNFRYSYLVTPDEYKGVKKYKAECLIKKGTMMKDDKGREVDAVEHIYSQLEDLLERWKVSLKEYYPDRKFTLTKNKFGEPSLPYYLEDEYLVIKTNKKAGGVKQNGDVWTNPPVTFWANEDPLRLMTDEEKKEYEKISPMTEGQMSMKCSGYDAGANGVGIRCQPLQVIVRNHVEWTGSPDFEAAPPSSYEEKTVTGHTGDWGKQPNAADF