Scaffold Ga0211691_10001485

Overview

Basic Information

• Taxon OID: 3300020447
• Scaffold ID: Ga0211691_10001485
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000745 (ERX556090-ERR599159)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8542
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (85.71%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_078
• Coordinates
  • Lat. (^o): -30.3455
  • Long. (^o): -43.2924
  • Depth (m): 800

Associated Families

Family	Category	Number of Sequences	3D Structure?
F065853	Metagenome	127	Y
F095612	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211691_100014856	F065853	GGA	MAQTWQNTSLIMLRTMLNDAGCDDVRYPPQRLSDLLITGAYFLPLDINFSTTFVVDVEARTITPNPIDQTDGDEFINFMVLRAACMADEGNFRTAALAQGISARLGPASLQTSNYGQYLHMLLKEGPCRTYERLVEIYNVSYEGSKVIRAVLSPFASNNYDPSNQLGSLGAGSQAQGGNYPTYP
Ga0211691_100014857	F095612	AGG	MAVTANQRLCKQPAEKRQFTMDFTNILGTDEAITQITSVSSEKEGGYLTDLSITSTGIATGSKKVTMFIESGTLGSTYRIETLVTTDASQILEGDGILFIRDM