Scaffold Ga0211574_10062595

Overview

Basic Information

• Taxon OID: 3300020446
• Scaffold ID: Ga0211574_10062595
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001287 (ERX556031-ERR598989)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1661
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_137
• Coordinates
  • Lat. (^o): 14.2017
  • Long. (^o): -116.6336
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002747	Metagenome / Metatranscriptome	533	Y
F003154	Metagenome / Metatranscriptome	504	Y
F006347	Metagenome / Metatranscriptome	375	Y
F044809	Metagenome / Metatranscriptome	154	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211574_100625953	F006347	GGTGG	MIDRITELINELEQEINDGYNTLPDYQTNDEGKTYINGAQATLYELQKQITELKQGLEQGKNFSLLGEESNNG
Ga0211574_100625954	F002747	AGGAG	MARDAKRFWVNACIEIYVPDQGYGEKATKNEELDAQWFANEIASQIPKAINKNFRFSERPYSVNDVMVGKIEK
Ga0211574_100625956	F003154	GGA	MMNLVGGVYIDERGYRHYRVQDKTYDIRFHPMTLEWGCSCPAYKFGRGKQCKHIKEIQEGKK
Ga0211574_100625957	F044809	GAGG	MPTEQQQWLDKYNTYYAATEYNRKRYGKRIKQLKH