Scaffold Ga0211574_10054502

Overview

Basic Information

• Taxon OID: 3300020446
• Scaffold ID: Ga0211574_10054502
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001287 (ERX556031-ERR598989)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1797
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_137
• Coordinates
  • Lat. (^o): 14.2017
  • Long. (^o): -116.6336
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014794	Metagenome / Metatranscriptome	260	Y
F018622	Metagenome	234	Y
F018815	Metagenome	233	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211574_100545022	F018815	N/A	MNVSLEKVSNFLKPFLLQDIVIRTNKKVLKKGKFKIFQVKQYYINLTLEINGSNKNYEIPYPFKMDYDDDKGVLNYHLSSFIPINQMTRVKFLDSSSKSKLYDNLVFILPSDGTTLK
Ga0211574_100545023	F018622	N/A	MIVQKATLDSLLSNNVLEIRFPRRIVKPGLAATRRMLCTNSLDLLNSVNGRISLNYFTPKGPRRPYLGPDNLSVAWDIIMQDYRNINCNQVDVIQEIPANEDFWIYFNENIYPLSQQQKFNFMNS
Ga0211574_100545024	F014794	N/A	MASIDNLAPTRSLIDLTQKDKGDFGLDDYDLDFIFDDILLVEYVDETDNGDEVIRNGIVVPTNALTKAWRKGRVVLAGPDTKHAKIDDIVIFPNNMGVTISNITISGGRKVGKAIFLNEERMFGICKPKDDSTKSNS