Scaffold Ga0211574_10045391

Overview

Basic Information

• Taxon OID: 3300020446
• Scaffold ID: Ga0211574_10045391
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001287 (ERX556031-ERR598989)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1992
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_137
• Coordinates
  • Lat. (^o): 14.2017
  • Long. (^o): -116.6336
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003869	Metagenome / Metatranscriptome	464	Y
F015105	Metagenome / Metatranscriptome	257	Y
F018383	Metagenome / Metatranscriptome	235	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211574_1004539110	F018383	N/A	MEKLTFNNEQLEFLKFIVQDFEYNDEHERYMIEQIENKIYQAQENQALKLL
Ga0211574_100453912	F003869	AGGA	MAKTQYNQTHYYSIGSMLTDEEVHQVWEIVGNALDRNGFTDADGELSIRVYDETLKKNVVNVIDKSLEV
Ga0211574_100453913	F015105	GAGG	MNLEQRKANMVYEIASLINDDPLSAPVLIEELVEVMFDEQVDHIEDVIVNHFGVEVYGEETVELLSQQQ