NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211574_10036850

Scaffold Ga0211574_10036850


Overview

Basic Information
Taxon OID3300020446 Open in IMG/M
Scaffold IDGa0211574_10036850 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001287 (ERX556031-ERR598989)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2242
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_137
CoordinatesLat. (o)14.2017Long. (o)-116.6336Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042906Metagenome / Metatranscriptome157Y
F073533Metagenome / Metatranscriptome120N

Sequences

Protein IDFamilyRBSSequence
Ga0211574_100368502F042906N/AMPLIKNNLYYELTTETQTKPVSAVKIQLDVLDGCHHKCPGCFVHRRGNASDENQIRKAEAFIESITNQGILVDEILIGPTDFLASENFYEVMPQLEYIINDNSPILAFVSTLIDGDIVRFCDWVTRRINTDTEIEIGIATNPHKFYEKKYVQHIRDVLKYIDENLEHEVTYTFVVNIKDYGLDYSALHDQAVKEFNTILDFIPSVSRSHKSNIILATLDKFNEYFNVLSKDTKLNNIMVDHSHGGMNYQVLNYKKGDWFISPFMYENMAIYDDTFKIEKFDDIHPIIESQQFLAKGTECEKCELYFSCYNRKIILLRDYLGEDRCIAPKENMMRNIDNYNHAAQTMYQWDGYSVDNDKKGYRKKFLVTKDNDPELERIKSISYVK
Ga0211574_100368503F073533N/AFEEIMNHEYMFKLYEISSIGFTSTLLQPYWIIKEKLDKIWSLYRNIKRIPDIDFKIVLDVDKYLDGELDEWYKKLKLFEDGSVQFRVNYYKGVFDRISYNELCEKTFEDFNAPVVITPSFLTDRNARGKVKQHLANFREDLLNQNIDEKWRNYYTFFDAKFNGLGCQNYSFYGGKLYINPFLYDAIIQRTPFFETSMDENKLSDNIEYAQQVDDCNGCEFMMSCAERNVHMYMESRDLTSCVALKEYMHATH
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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