Scaffold Ga0211574_10012013

Overview

Basic Information

• Taxon OID: 3300020446
• Scaffold ID: Ga0211574_10012013
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001287 (ERX556031-ERR598989)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4182
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_137
• Coordinates
  • Lat. (^o): 14.2017
  • Long. (^o): -116.6336
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001026	Metagenome / Metatranscriptome	802	Y
F001479	Metagenome / Metatranscriptome	687	Y
F004869	Metagenome / Metatranscriptome	420	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211574_1001201314	F004869	GGAG	MSCNNEHYYQVHTFMNDEELTSVWDTIEKAMNRHGYDVSNAELSMKLYDDELEENIEYDMEEYLSSQSEGKDYGSKVDALVDSMSVTDKEVSTTHRRRDLDTL
Ga0211574_100120137	F001026	AGGAG	MMHTLKLDDMELTALITHLEGHNEVMCESRANSDSNPSETPDREEVLLNLVYEKAFTMGWDKHINPKVDFDLIKNQDRIYKY
Ga0211574_100120139	F001479	AGGAG	MSKEMLFLCDVYDDWLDKNNLPHRSACDILYGQNACKLTPRQTYWLESFIAAWDVIAEHC