NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211574_10000425

Scaffold Ga0211574_10000425


Overview

Basic Information
Taxon OID3300020446 Open in IMG/M
Scaffold IDGa0211574_10000425 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001287 (ERX556031-ERR598989)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)23397
Total Scaffold Genes36 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (38.89%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_137
CoordinatesLat. (o)14.2017Long. (o)-116.6336Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001222Metagenome / Metatranscriptome743Y
F003188Metagenome / Metatranscriptome502Y
F020020Metagenome / Metatranscriptome226Y
F029450Metagenome / Metatranscriptome188Y
F041866Metagenome / Metatranscriptome159Y

Sequences

Protein IDFamilyRBSSequence
Ga0211574_1000042510F003188N/AMIDPIKRIRQTLFSIHPLSYRIKRKTLDKASMEKKLFIEVINTLKQIEERRDFMQEEIGMDVTTYEDKFFSVIENLMKMHFSKEQLALIQMYLYQLAPDKEWDGTITVTKNKVEENVPFKKPEDVWKVITNFTK
Ga0211574_1000042511F001222N/AMKRLKELVSMVTEAAKINFAGHSFLLKVDTNEDPQKKGVKVQFIPTEFGSLTPTQQNDIAIELEERLEQGLGEYELKVERDRNLKDKTIIGFFIYIEYFDKIIRKALSDQNPTSDVEDEEPQL
Ga0211574_1000042512F020020N/AMKKYLIEFTHSDGTVEEIELTTDRLEWSIEQWSRNRSVVSHKVLKESSSNPKKMLLG
Ga0211574_1000042516F041866N/AMILYQVHHMWYESSMIDECWHSVLQALRAAPDVDVKVQICFNMQTYIEKPEVDNHRLMLTKWDSHPLMQDYKPELVIKTDDEPFYNIADWRREVYDPEAKYTVWGETDTILPRDIFAILDKVEINQPHALTFAGRPMWDNTWDVVTHERLLGYSKPCQCKPHKDDCIELLEAPWKYKDYITQKELDKFNDESGDIKIQQVPWKIDGSTVCLSGGIETPFIAPGMHFVREDTCLEYYLRKKNIPQVCITSRLKGHNYKHPNKRVGTNATRNDEVFKKYADVSIAAMQKFLSEL
Ga0211574_100004253F029450AGAAGVVRLHFKKTEDFEGLFKRKSLSVTRSIIKGIEEAMKQNKRTAPLFEISFDEADTMFEISLSSSQWEHALQSCLEHLHAKELPDEQIDCWKLLEAAKAW
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