Scaffold Ga0211574_10000027

Overview

Basic Information

• Taxon OID: 3300020446
• Scaffold ID: Ga0211574_10000027
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001287 (ERX556031-ERR598989)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 78429
• Total Scaffold Genes: 156
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 72 (46.15%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_137
• Coordinates
  • Lat. (^o): 14.2017
  • Long. (^o): -116.6336
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003751	Metagenome / Metatranscriptome	470	Y
F004325	Metagenome / Metatranscriptome	443	Y
F037769	Metagenome	167	N
F067817	Metagenome	125	N
F071303	Metagenome	122	N
F072439	Metagenome	121	N
F074765	Metagenome	119	Y
F087060	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211574_1000002713	F067817	N/A	MLRPNTELLREEVNQGQPRYVDVSKGTLTAKTKRAEAINKATLRKKSK
Ga0211574_1000002735	F037769	GGAG	MPDKDAKKIINHVFSDLIKWTYEDAVFHLTQIFNFTDEESDQLIKEYDILTSTTKEVIMNPPPSFEATAPRDVNDYKSNLWQARKLLLEAKKLISATALTPRDYHNQKDFEEAIVQRMELQVNFVNINKYIDDHLTFAKNYTPPGK
Ga0211574_1000002741	F087060	N/A	MYTITTKPMTQSQTTSNNTSQKEAISRLSGITKGKPVVTGDAPQTKKFDPVADQDNRLMQMLELSLAIKDKKSEYDDLRKSFMNDLKAALDDNEDNPKIRHSENERVHVYLSKRRVYKYSDKLTAKRLKLEAQMADLKDEEAKEVRHNKADLIKQTFTVSFKA
Ga0211574_1000002748	F074765	GGAGG	MTTKTITKKPKTITVSKLSHRKSRDGWISYNCELRVGRTCYAAVDQEGCGGDARIDWNNTEHYLFIHHWILDTQKDFLRKDEVEWIDTYVQLGHKTLEESYKEKQELIKKYNLWDKLAKKQPKTWHDAREIQQKLGFFDDMVGSWTTTYVENKVGDKYN
Ga0211574_1000002763	F071303	N/A	MVQFGNLKRNLKTPADKVTFQGKNPANKTTGPNTAGNLQDPWRGTLDNNPLNDDFYQSSYTFGNQAPEVQQRLEGLQFEYGNAFEEGNNEFAQNFLNKYTSALGGSDSAENKGLIEQDRIVRPENLAQLAAQPATGGNAIQDSNVAGKFPSQEVNV
Ga0211574_1000002775	F004325	N/A	MKKKKASTTQRADQFLQAIGTAGGPIGSPQLVGFGGTDVQSQLASGNRDEYESIRMRQGDTRVVEGAKMPSDLDASYLKLNLPGSPLPANGLLAPQNMVAAERNQDFIRSQEQMFLSQYLPAAGLSQLPVGQPPLESNKGKK
Ga0211574_1000002778	F003751	GGAGG	MATYKSDAGAILQPGNQINALSAFNTEGVHGWPGIDLFEQIGFIKVSNKSGTKASFKSFDITIPSPDRRPDDRVRDDRTSLVVKASTARPAYVYQASLAIAQDIPAGGLPSFPASPVTADLQGTNGEFLLLGPDNSGAPFGVPSTQANGLAAASSLLDIGASGIAQGTGNTSTDGTNDGIVPFWSVVTGGGITAANAANSMMFKVTADTTFKVYNVNGITGTAVNGDGVFISDTDSDEGRAAYILCRINYLRASRAVSWSDVQTNIDFASQLGGTDS
Ga0211574_1000002781	F072439	N/A	MPHQDKAFIEHPSYKIKPRTSLGYTLGINRDKDIISPKERIKASPFKEKRRTRMAGEKRVDIFSVRPDQAPFTYTKGTNLPKRFTQTLDIPIDREEEN