NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211564_10242574

Scaffold Ga0211564_10242574


Overview

Basic Information
Taxon OID3300020445 Open in IMG/M
Scaffold IDGa0211564_10242574 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001996 (ERX555961-ERR599087)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)891
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_138
CoordinatesLat. (o)6.3354Long. (o)-103.0345Alt. (m)Depth (m)60
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005832Metagenome / Metatranscriptome389Y
F070548Metagenome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0211564_102425741F070548GAGGMANWNSSELQTPEPIKKIGQNAQNAINNLDILLKLVKSGADVAKMFLLLTNPAGTIIKIAANEIIQLCNDFKEIGVFYLFINPNDESYGGQTNRTFGLAIKQDVNGLYQFE
Ga0211564_102425742F005832GGAMLWWVDNMSKHGWQDSKGMEDSEMVEKWTKVLHTVEDAVEQLNYQKAALIKKRENIVNSEENKNG

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