Scaffold Ga0211564_10086081

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211564_10086081

Scaffold Ga0211564_10086081

Overview

Basic Information
Taxon OID	3300020445 Open in IMG/M
Scaffold ID	Ga0211564_10086081 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100001996 (ERX555961-ERR599087)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1567
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location Name	TARA_138
Coordinates	Lat. (^o)	6.3354	Long. (^o)	-103.0345	Alt. (m)		Depth (m)	60
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F012719	Metagenome / Metatranscriptome	278	Y
F084838	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211564_100860812	F084838	N/A	MCVRQKPARYQSRQNPRMKVIVLMIVITMYGCGFKPKVSCNTENIDIKNITESCIEQPQFGISKEF
Ga0211564_100860814	F012719	GAG	MDKYLKWIATSFLMIGVGANSLAIYPLGPLATLAGGLCWLAVSIMWREAALITTNLVLSTITIIGLLYTYIGV

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