Scaffold Ga0211564_10060103

Overview

Basic Information

• Taxon OID: 3300020445
• Scaffold ID: Ga0211564_10060103
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001996 (ERX555961-ERR599087)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1896
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_138
• Coordinates
  • Lat. (^o): 6.3354
  • Long. (^o): -103.0345
  • Depth (m): 60

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002874	Metagenome / Metatranscriptome	524	Y
F007052	Metagenome / Metatranscriptome	359	Y
F012279	Metagenome / Metatranscriptome	282	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211564_100601034	F002874	N/A	MSKNRTKVDLSLNRSLQELEDSYWEFIDVTEGEDSAMWSETVQENFSALEGYLMRQDRL
Ga0211564_100601035	F007052	GAG	MEKITETYFVAKLSKKGKFLSSEIFMSLEEARIWAMKEAKLLISHIEMLRSTNVGDIVVEIDKHFFGYEASSDEILKNSVKVI
Ga0211564_100601036	F012279	N/A	MVKMEKLIESRLEELKENAANLAAMETAVELCRDRKWKLVEELKELGHDFTATTEGMNVVLSAPPSMRF