Scaffold Ga0211564_10024349

Overview

Basic Information

• Taxon OID: 3300020445
• Scaffold ID: Ga0211564_10024349
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001996 (ERX555961-ERR599087)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3025
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_138
• Coordinates
  • Lat. (^o): 6.3354
  • Long. (^o): -103.0345
  • Depth (m): 60

Associated Families

Family	Category	Number of Sequences	3D Structure?
F053539	Metagenome	141	Y
F054094	Metagenome	140	Y
F103059	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211564_100243491	F054094	N/A	MDNNDYTRRNRFSGESIELTKEEAKKHDELFYHEALATLEDKQLGEGMSKHWQE
Ga0211564_100243493	F053539	AGGAGG	MKQFPFKDGTLFMITYCPQTIGGEVNYEHKHITRRGKWDNGCRINKGFILYYDRDRGNYRYASNKLAPVCISLGLNKEEMRVIN
Ga0211564_100243496	F103059	AGGAG	MQENIRHSLMKQKIYYSVDEETGDITLDLHEMEQEAIEQLKEANPGKKVTAAYAS