Scaffold Ga0211564_10013396

Overview

Basic Information

• Taxon OID: 3300020445
• Scaffold ID: Ga0211564_10013396
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001996 (ERX555961-ERR599087)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4052
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_138
• Coordinates
  • Lat. (^o): 6.3354
  • Long. (^o): -103.0345
  • Depth (m): 60

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004819	Metagenome / Metatranscriptome	422	Y
F085576	Metagenome / Metatranscriptome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211564_1001339610	F085576	AGGAG	MKQWFIKLKSGNFENGYYEVGSNFDLVLECVKSEFHKDCIAQGFTPVTSEIVFMEQTEI
Ga0211564_100133968	F004819	GGAGG	MQFYPKDQDPRLDERTARFHARVLKEDLATLPFVLNTCNRDINIARASTYVSWDHDKEMWAEVDHLMMNFYIQARTSETRDELEDKINRGVVELLKGPRYYGQAKVYCMIDMHYPEDESIYDIVKVPKKKRKKAGWGISGEEGEITYHVTLHVQECNNMDLAIYDDPNRGDFFNLNGDNLESPMADLERIVNGK