Scaffold Ga0211564

Basic Information
Taxon OID	3300020445 Open in IMG/M
Scaffold ID	Ga0211564_10013008 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100001996 (ERX555961-ERR599087)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020445 Open in IMG/M

Scaffold ID

Ga0211564_10013008 Open in IMG/M

Source Dataset Name

Marine microbial communities from Tara Oceans - TARA_B100001996 (ERX555961-ERR599087)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

CEA Genoscope

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4110
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

4110

Total Scaffold Genes

6 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location Name	TARA_138
Coordinates	Lat. (^o)	6.3354	Long. (^o)	-103.0345	Alt. (m)	Depth (m)	60
Location on Map

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Source Dataset Sampling Location

Location Name

TARA_138

Coordinates

Lat. (^o)

6.3354

Long. (^o)

-103.0345

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041247	Metagenome / Metatranscriptome	160	N
F061913	Metagenome / Metatranscriptome	131	N
F084452	Metagenome / Metatranscriptome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211564_100130083	F084452	GGAG	MMLFDDSGNPLNKLIWNKVEEMFYWNISVESPINQLPFTMEFILACQKEFSMKVRDKEYPIHLGGIMDWKDKTMGDFVREIDRQYQSNYFVCENGTSTTGVVGKVYDVDDKPVANKWNIRGEALVKRLQKMQEERPNLTILDMGCGVNEYKNHLNNVTGVDPYRKEADIICKTSDFKPADDIKWDVIICFGCNNWYTYDEQYRNFMTLKNCLAPSGILLWSHIHNYYGKMFQPDYPHGHTWIHGDIEHAHKNSAFYFSDRDWKYTWYFNWTEHAVNTLSTHVGLSVNKIDYDHCNLYRPPMYRIFCEMSHA
Ga0211564_100130084	F061913	GAG	MLEQGNFYVKCHNIFYNQQWLIDVLDSLKPSDWVDGTSKTGVSWTVNECRNIPYENMWKDIVENIDLDLIGSSERDKEQKKPWCFFSKLPPGGINLHYDHRRWGAILFPVRGKFHLTPQIFATENYTEIERLYFEKSKIHNNGTPVFFDSRVLHAVPTPIDDKEERVVFSVNIHTHPTEMYRKALDGSWLKKNTMNIGVSND
Ga0211564_100130085	F041247	AGGAG	MTNFYSLRLDKLKFDREMLVDFYLTIDPTKWIHRQDKLPQYWPIDENNSFDRNHEFYKMLIEKINVSVDEKRIYFSRVHPGGIPNHWDFENFTKLQFPVVNDNFGNDWSETPVIFIDQFDQIVEKVDHTNNTPIMYSANYMHGTIKSLKNKYERITLVVDLNHWFERAKVKYNEGTLFTDNKAFWYEKLG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0211564_10013008

Overview

Ecosystem & Geography

Associated Families

Sequences