Scaffold Ga0211564_10004934

Overview

Basic Information

• Taxon OID: 3300020445
• Scaffold ID: Ga0211564_10004934
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001996 (ERX555961-ERR599087)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6630
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (76.92%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_138
• Coordinates
  • Lat. (^o): 6.3354
  • Long. (^o): -103.0345
  • Depth (m): 60

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000720	Metagenome / Metatranscriptome	923	Y
F003020	Metagenome / Metatranscriptome	513	Y
F004988	Metagenome / Metatranscriptome	416	Y
F030928	Metagenome	184	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211564_100049343	F003020	AGGAG	MPDTSSFKSVSVSVDTHGKLQQLAKNRFEVPVSIQKIIDFLLTKELKNGKS
Ga0211564_100049344	F004988	AGGA	MEKVKTICPRCEGNSYIRIEGKELDCPMCEEDYFGVKTHNGYVMLPIKQTRLNVEGGRESKIKWSGETLPEVGKVC
Ga0211564_100049347	F030928	GAGG	MKEFKKALEAYTSFLVLGFTIFICLIVIIVNSRYIVKLEGTLNTMWHEIEQVKETNISLYQFIEEHGDDIKAGR
Ga0211564_100049348	F000720	AGGAG	MTLKQDDKKTMRKEIPNRMMSATFALPIDNRKVIGIVNYVPSETGLSPMAFWMKLKPTDSYLDRELRASGKLISRCLQNGESLKDLAETLSQDNIIGQMANYLHKNMEDIIMGNPVDKKQRMLSTDPYAMKE