Scaffold Ga0211564_10004625

Overview

Basic Information

• Taxon OID: 3300020445
• Scaffold ID: Ga0211564_10004625
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001996 (ERX555961-ERR599087)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6854
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (52.38%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_138
• Coordinates
  • Lat. (^o): 6.3354
  • Long. (^o): -103.0345
  • Depth (m): 60

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007891	Metagenome / Metatranscriptome	343	Y
F042559	Metagenome / Metatranscriptome	158	Y
F058436	Metagenome / Metatranscriptome	135	Y
F097489	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211564_100046251	F097489	N/A	MNKNIFITNEAARKDPVVIAAMKSILKQMSDEHDRHVAGIAPETVEVSPVNFLQDVLDDLGDPQMRDREREEYFRNGWGDSRNGCWM
Ga0211564_1000462512	F007891	N/A	MTLYSNFNSSAINSVETKENEVLITYSSNIQKEYAYNCEDVPEFTNNLCSVLISNELTRPGGSVGQFIQQSRRDSVLTDK
Ga0211564_100046253	F058436	GAGG	MNTRRLEMTEAEETALVNLFLFVHDMGAPPHLEEDEAFNSLWEKVSDPSPFDYV
Ga0211564_100046258	F042559	GAGG	MSTISEFYSGLLDKGYSEREIRESAQRHSKRVAPDWFNGTYEEYLESMHDFLNGL