Scaffold Ga0211564_10000918

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211564_10000918

Scaffold Ga0211564_10000918

Overview

Basic Information
Taxon OID	3300020445 Open in IMG/M
Scaffold ID	Ga0211564_10000918 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100001996 (ERX555961-ERR599087)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	15067
Total Scaffold Genes	25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	20 (80.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location Name	TARA_138
Coordinates	Lat. (^o)	6.3354	Long. (^o)	-103.0345	Alt. (m)		Depth (m)	60
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003514	Metagenome / Metatranscriptome	482	Y
F028528	Metagenome / Metatranscriptome	191	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211564_1000091814	F003514	AGGAGG	VKHEKLILKAAKSSGANKAEILHGSLFVTFTPGFVDVLSNELKGVLEKLLKNATVKMYSLPDNEYAYDFI
Ga0211564_1000091819	F028528	AGGAGG	MNYFKKIVDWVCKPYEPEFRPKRVYKIKGKTYYLRKRKRSASSKQKRR

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