Basic Information | |
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Taxon OID | 3300020445 Open in IMG/M |
Scaffold ID | Ga0211564_10000032 Open in IMG/M |
Source Dataset Name | Marine microbial communities from Tara Oceans - TARA_B100001996 (ERX555961-ERR599087) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | CEA Genoscope |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 65063 |
Total Scaffold Genes | 61 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 26 (42.62%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans |
Source Dataset Sampling Location | ||||||||
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Location Name | TARA_138 | |||||||
Coordinates | Lat. (o) | 6.3354 | Long. (o) | -103.0345 | Alt. (m) | Depth (m) | 60 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F031251 | Metagenome / Metatranscriptome | 183 | Y |
F097379 | Metagenome | 104 | N |
Protein ID | Family | RBS | Sequence |
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Ga0211564_1000003243 | F031251 | GGA | MFHLAVIATTFTCIEAQTLLDKMNEFKIEEETRAEMISVVIEETPHCEWDAKAD |
Ga0211564_1000003255 | F097379 | GGAG | MSISTTYNIISKNETYSLIWPTQEVVNPSLEDPIIGILTSYTEINLFDEEGNVTGISTVKNEDPVRCPPEDFEPESCEVFLYSSSLSLTAGINTTTEYWAIHPSYTVDNISQSFFVPDENSVDRYEGDLAQLALMSEAEWCNLKFENDASLQTGIGTNYTFVILKQNENLRSKYLSTSTSPNNTFLVDQLGLKALSTTEHNTLVAIHDGGDDSIAGVGMATSAMDDPNDHSIPTTP |
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