Scaffold Ga0211578_10011461

Overview

Basic Information

• Taxon OID: 3300020444
• Scaffold ID: Ga0211578_10011461
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001245 (ERX556114-ERR598980)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3516
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_132
• Coordinates
  • Lat. (^o): 31.5319
  • Long. (^o): -159.0668
  • Depth (m): 550

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005948	Metagenome / Metatranscriptome	385	Y
F062151	Metagenome / Metatranscriptome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211578_100114613	F062151	GGA	MGTATYDAADTIISVINNNWTVGQVPNIQKVWNRRSVGFIDDRRDQIVITPKSEVITYFGLYGSDFWHDVTIDLDIRSYQNDERHNNIVKEVSKIIKEKIRGGNDYTDIRIIASYTRNQYMRNMFNHVLTISFRKLNPS
Ga0211578_100114616	F005948	N/A	MVELNHNVVSFNSDTLIKGAHGVIVNVYISKTGSGSDKVVFKNGTTSSGTAEFTIFTAAQGTYVGINRRFESGIFADVTGSAEITVVFK