Scaffold Ga0211578_10008568

Overview

Basic Information

• Taxon OID: 3300020444
• Scaffold ID: Ga0211578_10008568
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001245 (ERX556114-ERR598980)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4157
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (76.92%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → environmental samples → uncultured marine virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_132
• Coordinates
  • Lat. (^o): 31.5319
  • Long. (^o): -159.0668
  • Depth (m): 550

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002078	Metagenome / Metatranscriptome	596	Y
F015741	Metagenome / Metatranscriptome	252	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211578_1000856810	F015741	GGA	MQLKQKFGIGLVCLTFSTGCSFPIVELIPPVFNFALGFYDHNDYYSKECLWYDEIKLNDDTKKWLLESSPPEIVSEDLSKVSRNNDIYREVCKEHKSMMDKMKDKADRVIDKTLMATEE
Ga0211578_1000856811	F002078	AGGAG	MDIAAMFEGQGWFAIAGQIVLVFTAITGSLPDRFVQKIPVLGTVWPIFNWLAGNVFNNINHPKGMAAQNDVEKEIDAAKAKVRDRSGMPDVLDGM