NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0211544_10046501

Scaffold Ga0211544_10046501


Overview

Basic Information
Taxon OID3300020443 Open in IMG/M
Scaffold IDGa0211544_10046501 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001179 (ERX556000-ERR598944)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1701
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_152
CoordinatesLat. (o)43.7649Long. (o)-16.8935Alt. (m)Depth (m)800
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007837Metagenome / Metatranscriptome344Y
F016759Metagenome / Metatranscriptome245Y

Sequences

Protein IDFamilyRBSSequence
Ga0211544_100465014F016759AGGMSMEPIQRLMSNNAAGVAGTPQLLNDQVTGLTFIQLNTPNTILDMFNSPDPAVGNTYQDVLQKNSISTGRTFFTTAMSTTSAGRAAVGPIRLASGQCQFESTLAVGGVATANDNNLVIKFSNGF
Ga0211544_100465015F007837AGGLPKVSARNLSLKLNTVIDLKTTANPLIVNYPAAYQSLAQSILIDNQDAANAVTVRLNRSTNTINIASGNFRAFNDAWIEQIDLTGPSTNTQVTAQISPLTQISPYGQGVTN

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.