Scaffold Ga0211559_10268581

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211559_10268581

Scaffold Ga0211559_10268581

Overview

Basic Information
Taxon OID	3300020442 Open in IMG/M
Scaffold ID	Ga0211559_10268581 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100002019 (ERX556121-ERR599162)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	798
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_140
Coordinates	Lat. (^o)	7.416	Long. (^o)	79.3102	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F024809	Metagenome	204	Y
F038719	Metagenome	165	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211559_102685812	F024809	AGGAGG	LNYSQKVLFDDWIKRCPIDGVFVDEPVSEVQMDDGKVGYLVKVFLTINKKDWEENQSPPG
Ga0211559_102685814	F038719	N/A	TRDKILHRCEILRYMGDDGISCIYDQLPDDELMEDCGWVLDKEHDDLDNFQFGLTRKIINKAAARSAKDMWS

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