Scaffold Ga0211559_10200758

Overview

Basic Information

• Taxon OID: 3300020442
• Scaffold ID: Ga0211559_10200758
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100002019 (ERX556121-ERR599162)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 942
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED166 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_140
• Coordinates
  • Lat. (^o): 7.416
  • Long. (^o): 79.3102
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023383	Metagenome	210	Y
F049939	Metagenome	146	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211559_102007582	F023383	GAGG	MIKLRDFLNEGIPNYFRGYFSNIDDNISRLEKNVKQLIKDLGKDGLKKESLEVASLYKKHIIEFKVKLKNFEKKNRD
Ga0211559_102007583	F049939	GAG	MEVVPRPDDTPEWIWNETNVASVSSNGGKGWTAKLNSSDSIYEYDVESDATTKMDELFAADSTNRRYKVIEV