Scaffold Ga0211559_10092100

Overview

Basic Information

• Taxon OID: 3300020442
• Scaffold ID: Ga0211559_10092100
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100002019 (ERX556121-ERR599162)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1463
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_140
• Coordinates
  • Lat. (^o): 7.416
  • Long. (^o): 79.3102
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006867	Metagenome / Metatranscriptome	363	Y
F059941	Metagenome	133	Y
F063682	Metagenome	129	N
F098215	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211559_100921001	F063682	GGAGG	VKPGDLVRIRKTSIDHLSANWFIWHAEHKTPLVLIEELNKSYWKVLKPDGETVFIHKSH
Ga0211559_100921002	F059941	AGAAGG	VKLGTLVQFKAYDVVLDMGIISKYDDDPGFVWVQCAKQGSQRVNVDNTMMEVVSEAR
Ga0211559_100921003	F006867	GGAG	MLQGRELAKEIQKRSRIQPGMLVKSSGGSPVAKIALVVRLSPGCKFSQDYEGAEEHIFYKCEPLDGTPAFVDYVCNMEKVS
Ga0211559_100921006	F098215	AGTAG	VKADFAYQVGDLVSFNSRRLTEDYIDDFVLTGVVIKQRYVFTADNKFLVRTPEQDYWVSRPLLTLLSRAQNKS