Scaffold Ga0211559_10028474

Overview

Basic Information

• Taxon OID: 3300020442
• Scaffold ID: Ga0211559_10028474
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100002019 (ERX556121-ERR599162)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2798
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_140
• Coordinates
  • Lat. (^o): 7.416
  • Long. (^o): 79.3102
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036270	Metagenome	170	Y
F058913	Metagenome	134	Y
F080142	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211559_100284743	F080142	AGGAGG	MKVGAGEFIKKDSGEVIWGSEAFIHEVFKTLYGDEYEYEAWSYDNALQKIKNLVQLAEDN
Ga0211559_100284745	F058913	AGGAGG	MKLTKEEARWLDDKWNDFYYYFQVEDMFEKDQELFRSIGKKLSEVKQ
Ga0211559_100284746	F036270	AGGAGG	MYIESTDKQAVFKGDEAGHKLLQLIDDMGWDYDRFSSSGQETYDKICTILATVKEVKDET