Scaffold Ga0211559_10017451

Overview

Basic Information

• Taxon OID: 3300020442
• Scaffold ID: Ga0211559_10017451
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100002019 (ERX556121-ERR599162)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3644
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_140
• Coordinates
  • Lat. (^o): 7.416
  • Long. (^o): 79.3102
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012123	Metagenome	283	Y
F016409	Metagenome	247	Y
F041145	Metagenome	160	N
F046317	Metagenome	151	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211559_1001745110	F046317	AGG	MSPIDKKKKYFEFLINEYDEGRAKIRGDHPQEIKVAVDTFFKAGKILVDNPESGNIPSEYVDKLLSALAQYPQYHPLLLDLIHIIQDGEGEG
Ga0211559_100174513	F041145	AGG	MSKPSKISHDNLLKKLTMLVKLCEETEPTPKQLLKMSGEKNADMTDLFTPEMIDAKFYLEEVKQQEYDSYSVIDIMRACNTIWRWRMKVKKDGWPDMSSIEYICGEHIKKNEKITAIKRYRQYMKDRDKEVSLKDAKDWVDRLAIKMDLD
Ga0211559_100174517	F012123	AGG	MIKRNPCRVKKVEYTADGVQVVERRGYAQERKTIDGVEQVFVMEGGDTGIGYWYPKDEVTFVHGGWRNAKRQ
Ga0211559_100174518	F016409	GGTGG	MLNANKLGYYIWKRINQDQEHLSRVRPRNLVGLYVNEKDIHRYIMDYFNYGMDWDDTSKEELWERRYWDEKDIDI