Scaffold Ga0211559_10008883

Overview

Basic Information

• Taxon OID: 3300020442
• Scaffold ID: Ga0211559_10008883
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100002019 (ERX556121-ERR599162)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5269
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (18.75%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → unclassified Opitutae → Opitutae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_140
• Coordinates
  • Lat. (^o): 7.416
  • Long. (^o): 79.3102
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009699	Metagenome / Metatranscriptome	314	Y
F018534	Metagenome / Metatranscriptome	234	Y
F020115	Metagenome / Metatranscriptome	226	Y
F025731	Metagenome / Metatranscriptome	200	Y
F029600	Metagenome	188	Y
F032639	Metagenome / Metatranscriptome	179	Y
F048249	Metagenome	148	N
F055727	Metagenome / Metatranscriptome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211559_1000888310	F018534	N/A	MALPTLTDFLTSWDKLIVTGMTPERNDSVMTVAPNGATVTIEYRHQISHSSGVCSTIAYLVGYDSNGNRVTLRNQTYGCFGDEEKQFHQWFAKKFATAVEMDARRSRDLSDGIDRILA
Ga0211559_1000888312	F020115	N/A	MANVNIDTQMMNNTMTYEQFQLLRQWAERVANTANDTDTNIRSIDLVHDIAGILANDEHFLPRL
Ga0211559_1000888313	F009699	N/A	MITEDLNLQDMMTDKEAQAFMQKVDSSAPFWQELHSEDRPTIKIQGRDVPRCLYNLMVTRRDVNLYLHGLKPHRGWKIGDVKAYFGLKGGKQKVADAINAMHSEFMGRFNEQNDEETTD
Ga0211559_1000888314	F032639	GAG	MKKQLINEDGFYAGSELKWGMDDVRNVLERFGRATTTSKEDVERILIAAFQDNYRLMETIDEAIGDTIAYMIDEGQLKTDEQ
Ga0211559_1000888315	F029600	N/A	MKYWNGEGQYQDLFHKHWKNLVPESGRADTAEGNAMRAIAKINYDIFNNGAGNIVNQVEEMDEDGEYYTDYSINPWWNEYFDDIEEFAGLNMDRLRTKILGYVHWDRDAGLSELMDDYIDRIVLRVDNQSVTK
Ga0211559_100088834	F025731	N/A	MLHSTNTERKKAQMASALFNDVQLLGSTVTCTAEFDLLSCDEQMRLVDLVNSAQ
Ga0211559_100088835	F055727	N/A	MYNHFLEFSVDEMVDAYTYFTLIHDYEGCRLVGAAFAQNTSIDFQNF
Ga0211559_100088839	F048249	N/A	MKTSIFNTRIIRKGSQVLYRGSWGRDAQTVAEVIAIEQTQGPNEKYGDEVDAVTLDDHYVLTLNNGHWCYSYQVDGLVQPNENQSVAK