Scaffold Ga0211559_10006391

Overview

Basic Information

• Taxon OID: 3300020442
• Scaffold ID: Ga0211559_10006391
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100002019 (ERX556121-ERR599162)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6303
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (73.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter → unclassified Maribacter → Maribacter sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_140
• Coordinates
  • Lat. (^o): 7.416
  • Long. (^o): 79.3102
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007006	Metagenome / Metatranscriptome	360	Y
F020467	Metagenome / Metatranscriptome	224	Y
F028356	Metagenome / Metatranscriptome	192	Y
F037128	Metagenome	168	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211559_1000639114	F037128	AGGA	LTRRIKKPLKEFFDKQSLTDAENEFILGCINAQNKYPQLTHRQWQIVNEIKERYEKCQNTQE
Ga0211559_100063914	F020467	AGGA	MHKRPSLAEAKAILIQHSPDTMIEYENMKITHGEFFAARYIVDIVDHFNHLQEKVING
Ga0211559_100063916	F028356	GAGG	MFFKLTSRNAYRDLVRNARRICIADMSEAEKSEAFQELYNMLQQKLDETTRSLNSQPAYAKRCEHWNQRDVANLKPVKTDRNPWLLFKREFVDAMSQPVEFHAKRVSVALAWFYATPYRDDWVK
Ga0211559_100063919	F007006	GAGG	MEHALKAEVKKEINRIVDLMIQADSIRESIAELKKDIKNEYAIPVTTITKVATIIRKQNLDEEEQKWDEIKEWVDICS