Scaffold Ga0211559_10000773

Overview

Basic Information

• Taxon OID: 3300020442
• Scaffold ID: Ga0211559_10000773
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100002019 (ERX556121-ERR599162)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19761
• Total Scaffold Genes: 40
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (62.50%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_140
• Coordinates
  • Lat. (^o): 7.416
  • Long. (^o): 79.3102
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004325	Metagenome / Metatranscriptome	443	Y
F038719	Metagenome	165	Y
F071303	Metagenome	122	N
F074765	Metagenome	119	Y
F078604	Metagenome	116	Y
F090494	Metagenome	108	N
F092069	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211559_1000077310	F074765	GGAG	MPKTLTPKQTKITVSKLSHRLSRNGWISYNCELRKGRTCLAAVDQEGVGGDERVAWNNTEHYLLIHHWILDTQRDFWREYEVETINYMVELGHKTMKDSIKEKLDLMKKFNLWEKLAKKKPKSWKEARAIQQQLDFHDDMVGAWTTVYVENKLADKYYD
Ga0211559_100007732	F092069	N/A	MTTVIFEYNGKSKEIPIDEIKSVNDVADAYAKLGLKTKQPIKRRLYYTLPNGKYHSFLSNKNHKYAVACTSKDTVLGFCYTDDYARAKTTAANWSNKFNNSKEGFRKFVVVDVQEVE
Ga0211559_1000077323	F078604	N/A	MSNDFYIISTNATIKSTSKFLDYDFYEKELKTNNKLKPHIKDLDINATYYGKKCVKCTIPSLFISIEYKDLNKDIYLIDHEVFLYEEDYPTMEALENYKNKFDFNFASQVNPEVYEIIDAFHNGYGCMCLSSEGY
Ga0211559_1000077324	F090494	AGG	MSTKHTETFKAFQNKHNLSYSNFFTFTNPKVLKNEKVSEIPTAILMLMNTPKACPAAGSCRSVCLITSGNPIYLDNKIKCRIRRNNAFMNDYSIFLRYLVINCFRHYSKHRTADKVGFRLNGVSDYAWEDFSVKLTAEDTDYIKKAFNIFIEPIRYGSVIEAVQKAIDLNNNKLLKNSVQFYDYTKRIDRSFDKCKKLNYHLTLSHGSKFDTFSKALELGLNYAAAFNLKKSQNLPKNFTYKGIKLNVIDGDITDYRPLDNNNKTNIVGLHFKIVVNKDNAKKLDFCIA
Ga0211559_1000077327	F071303	N/A	MVKLVNLNRRLKTPADKVAFQGKNPANKTTGPNTAADLQDPWRGTLDTNPLNDDFYQSSYTFQSQSPEVQQRLEGLQFEYGNAFEEGNNEFARNFLDKYTAARGGSDSAEDKGLIEEDRIVRPENLAQLSAQPAAGGNAIQDPNVAGRFPSQEVNV
Ga0211559_1000077338	F004325	N/A	MKHKKKASTTEKADKFLQGIGTAGGPIGSPQLIGFGGTDTMSQLQAGNRDEYANIRMREGDTRVVEGAKMPSDLDASYLKLNLPGSPLPANGLLAPQNMVAAERNQNFIRSEEQMFLAKFIPAAGLMQLPVGQPPLESGKGKK
Ga0211559_100007737	F038719	AGGAG	MDSKTREKILHRCEILTYMGDDGIPCIYDELPDDELMEDCGWVLDKAHDDLDNFQLGLTRKIINKAAARAATKDMWS