NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211695_10244399

Scaffold Ga0211695_10244399


Overview

Basic Information
Taxon OID3300020441 Open in IMG/M
Scaffold IDGa0211695_10244399 Open in IMG/M
Source Dataset NameMarine prokaryotic communities collected during Tara Oceans survey from station TARA_078 - TARA_B100000524 (ERX556088-ERR599006)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)646
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_078
CoordinatesLat. (o)-30.1885Long. (o)-43.2831Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001504Metagenome / Metatranscriptome681Y
F030123Metagenome / Metatranscriptome186N

Sequences

Protein IDFamilyRBSSequence
Ga0211695_102443992F001504N/AMSYDTEHYYAVQTFLDDDELIKIWNIIEIAMNREGYDVENAELSMRLYDQELTENIEHDMEHLL
Ga0211695_102443994F030123AGGAGGMSAISTDGMDKWLDDAYPDLDRRKANMIYEIASLIKDDPDSAPVLIEELVDIMFDEQIDHLEDV

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