Scaffold Ga0211695_10000388

Overview

Basic Information

• Taxon OID: 3300020441
• Scaffold ID: Ga0211695_10000388
• Source Dataset Name: Marine prokaryotic communities collected during Tara Oceans survey from station TARA_078 - TARA_B100000524 (ERX556088-ERR599006)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12615
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (47.06%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_078
• Coordinates
  • Lat. (^o): -30.1885
  • Long. (^o): -43.2831
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029713	Metagenome	187	Y
F033766	Metagenome	176	Y
F036656	Metagenome / Metatranscriptome	169	Y
F085551	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211695_100003883	F029713	N/A	MSNDKYDSEAELKAAKRAEIERLWFAEEATNEDLLQAYKALDIKKEDL
Ga0211695_100003885	F036656	AGGAG	MKLCSNQSIPCEFLKGACIFLSDEDEGRYIKDVCVDLEKHSIILIDDDGNGMYWESLRNASIQFQGGR
Ga0211695_100003886	F033766	AGGGGG	MSDYPYNLTAIATHLKELSLSIAKKLDISEEDAWDLCIEKLESKFLRMKREEDQ
Ga0211695_100003888	F085551	GGA	MSYSIRTRLHHWIEQCPCTNFLVKNKKEQEQVDGVWYDVVVVECLVKAEEQQ