Scaffold Ga0211518_10056230

Overview

Basic Information

• Taxon OID: 3300020440
• Scaffold ID: Ga0211518_10056230
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_E500000178 (ERX555952-ERR599043)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2229
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → unclassified viruses → Circular genetic element sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_025
• Coordinates
  • Lat. (^o): 39.3599
  • Long. (^o): 19.4084
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001611	Metagenome / Metatranscriptome	663	N
F009559	Metagenome	316	Y
F013311	Metagenome / Metatranscriptome	272	Y
F046309	Metagenome	151	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211518_100562301	F009559	N/A	MNQVLLYVSVILASVSFFLCLYACARVGKLLNSVKGLDWDIIASLTGDIGTIKKSIQTLNNRINGLNSP
Ga0211518_100562303	F001611	AGGAG	MPLVQKTLTLAAGATSDNILANTNYEFVDGNVRLRVASAVDTAGTSATADTFLNVSVNNAEYSKDVSVPALVTGQPFGVLNGSYLNNDLLTTGSQRNRVLVRFTNDTAATRTIRCGVFIG
Ga0211518_100562304	F013311	AGGAGG	LAFLGDFGKFFNLGSSKEVLGNVGESVGTFIGGPQGGQIGKSIGRTVARATDNLAGDGNVSQLSTADQALEQSAVPVSQTGDIPQETSMNVGTTGTVQAGFGSVLPSLIGGARSIAPQIGKFLGSPVGSIGTGIATGVGVNMFQGQQMSMGKPVLTQSRRNKAKVRQLVNFMGIEGAAQFLSQASGQNVTGNDVVQLLLRTFRNDGAFITKAQVRNLRRTTNRFKSLEKQVKEATSMTRTTRRPAMRRASSTTLIKN
Ga0211518_100562305	F046309	N/A	DIGTIKKSIQTLNNRINGLNSPKLNDELLQYAIKQQNGAMHQKDNLGG