NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0211518_10056033

Scaffold Ga0211518_10056033


Overview

Basic Information
Taxon OID3300020440 Open in IMG/M
Scaffold IDGa0211518_10056033 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_E500000178 (ERX555952-ERR599043)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2234
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → unclassified viruses → Circular genetic element sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_025
CoordinatesLat. (o)39.3599Long. (o)19.4084Alt. (m)Depth (m)5
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001611Metagenome / Metatranscriptome663N
F002374Metagenome / Metatranscriptome566Y
F013311Metagenome / Metatranscriptome272Y

Sequences

Protein IDFamilyRBSSequence
Ga0211518_100560332F001611AGGAGGMPLVQKTLTLAAGATSDNILANTNYEFVDGNVRLRVASAVDTAGTSATSDTFLNVSVNNAEYSKDVSVPALVSGQPFGVLNGSYLNNDLLTTGSQRNRVLVRFTNDTGATRTIRCGVFIG
Ga0211518_100560333F013311AGGAGGLAFLGDFGKFFGLGSSKEVLGDVGGTVGSLVGLEGAGRKAGEFIGQATSSIGGGSNVNLSPLSTADQALEQSAVSVSVRGNVPQETSQQIGTTGMNVQTAGFNLIPQAIQGLRGIAPQIGKFLGSPGGAVALGGGTGIATSFLTGSQMSKEKPVLTQSRRNKARVRQLVNFMGIEGAASFLTQSSGVTVTANDVVMLLLRTFRNDGAYITKAQVRNLRRTTNRFKSLEKQVKEATTMTRTTRRAPMRRASSTTLIKN
Ga0211518_100560334F002374N/AMDQVLLYSSVILAVVSFFLCCYACARVGKLLNSVKGLDWDTIATLTGDIGTIKKSIQTLNNRINGLNSPKLNDELLQYAIKQQNNVTDIRKNNIGG
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.