NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211518_10052167

Scaffold Ga0211518_10052167


Overview

Basic Information
Taxon OID3300020440 Open in IMG/M
Scaffold IDGa0211518_10052167 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_E500000178 (ERX555952-ERR599043)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2338
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_025
CoordinatesLat. (o)39.3599Long. (o)19.4084Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001607Metagenome / Metatranscriptome664Y
F001614Metagenome / Metatranscriptome663Y
F081297Metagenome / Metatranscriptome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0211518_100521671F081297AGCAGGMAIRPSVPEIITVNSEELQTVIRDLLPSQSGFGSELQASNVITPVIDLTPTAEGSRLPTSMQQAFDFGTTNATATGNTVTLIDQTGFWRCFFSFISVSNNN
Ga0211518_100521672F001607AGGMPVIANNVSLTAGSSSVNIFDNTNYQFVNEGTEIRVSAAVVGANDGVQGSNVNYRFTINNTEFADDAIVPTLVTGEPFTDGAASYRTNSVIATGQARNRPLLVFRNQTSGTLVVKFFVFISQQA
Ga0211518_100521674F001614N/AMVNFFGTYGGLICGFGGFLTAIAAFLYARMRVAEFERATHDLDWQQVSELSLDVAKLKKASQKWQNNMNAQDAVSLKNLKEQALMQSLIQQNGTVQPIRKVEM
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