Scaffold Ga0211518_10040101

Overview

Basic Information

• Taxon OID: 3300020440
• Scaffold ID: Ga0211518_10040101
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_E500000178 (ERX555952-ERR599043)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2757
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (78.57%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_025
• Coordinates
  • Lat. (^o): 39.3599
  • Long. (^o): 19.4084
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F067207	Metagenome	126	N
F087114	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211518_100401011	F087114	N/A	LEKVINKHIKRKTHGFDIACALADVSAQFIHDTAPSTASAQHILLNAIQQPLQEAIEYEKGEYENE
Ga0211518_1004010112	F067207	N/A	MGIETVIIGFIINLYTLDNIDFFHQRANNNKNMTCVWEYVGKKKPDPQNPSITLLGNVYYKQKCVRKELDK