Scaffold Ga0211518_10016841

Overview

Basic Information

• Taxon OID: 3300020440
• Scaffold ID: Ga0211518_10016841
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_E500000178 (ERX555952-ERR599043)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4759
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (33.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_025
• Coordinates
  • Lat. (^o): 39.3599
  • Long. (^o): 19.4084
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008386	Metagenome	334	Y
F046072	Metagenome	152	Y
F053565	Metagenome	141	Y
F075988	Metagenome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211518_1001684111	F075988	N/A	MMKNKLSQWLIDYVKKRNGVDLTNVPSDKSWTELNPFRDSTMLSDKVIEFINEKNLSGIKSSMDLVEEQSDKAAKEQRELNTVKGDK
Ga0211518_100168415	F046072	N/A	MKQKYDPHIRVRFDLFDDPQFRTIPNKHKAHCLCVLICLLKFVNNKTLQCYPRKATISSMTGLSYSTIYRATVWLIRAKIVSKKRLPSTLLYTINPKYIVGNKVSSHIDNRDRSGGLSDHSAGSLYNRTNTITTIDKLIKEVVDKGGDQSKIVSVLSTLPRKTLIKAIEDNDNIYYSKLALVEQDRNGAKLVDIPRSIVDNVRKKTHFGYQQVIRKKKDLNDRKNKSKDLLRSHSKDKW
Ga0211518_100168418	F053565	AGGA	MMKNYKDTYQNTLIASGKQNLTELARLTLLNILSVRGVIYTHYKNKQLKRKNKYR
Ga0211518_100168419	F008386	GAGG	MSSDKQLILIIITAVAVFGWQLWKDKKKKHDEKLQRHLSKYFDSKW