Scaffold Ga0211518_10012775

Overview

Basic Information

• Taxon OID: 3300020440
• Scaffold ID: Ga0211518_10012775
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_E500000178 (ERX555952-ERR599043)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5624
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (21.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_025
• Coordinates
  • Lat. (^o): 39.3599
  • Long. (^o): 19.4084
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015276	Metagenome / Metatranscriptome	256	Y
F092022	Metagenome	107	Y
F102069	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211518_100127754	F015276	N/A	MEKVIIEYDNDVVSTYDIVTFRTYKKGKKEVLFNHVDDLINHPSVRSHKFINPTKKRSVGEGITSTYIPKNKKENIPMPIEIADEIVMFAKGDGAGFTKEIVDKWNQYLNFDLHTKFERYGFTGSSRLNTIFKI
Ga0211518_100127756	F102069	AGG	MDTLIYIFAGIGVLATVIALYYFIKDQYAIWEMNTYDRLKKKFDW
Ga0211518_100127757	F092022	N/A	MSTHPVVQEFIEFKNKQLLKLVNREIQFKKFIHLVEETKQEAIKESGLSPKEFHKQVING