Scaffold Ga0211518_10003034

Overview

Basic Information

• Taxon OID: 3300020440
• Scaffold ID: Ga0211518_10003034
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_E500000178 (ERX555952-ERR599043)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12750
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (14.81%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_025
• Coordinates
  • Lat. (^o): 39.3599
  • Long. (^o): 19.4084
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016691	Metagenome / Metatranscriptome	245	Y
F080615	Metagenome	115	N
F082763	Metagenome / Metatranscriptome	113	N
F100992	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211518_1000303412	F100992	N/A	MSKTSAKGRYTQLMSWLKGYKSSPVSNFKKQQQKSKNNAKRR
Ga0211518_1000303416	F082763	AGAAG	MTAYLEGFVTKMIEQYIPEGKDTVAHVDCREFMYEYIFQLIEEEKIPQKLSAIKYLCMNYKKFVYTNLSMLN
Ga0211518_1000303417	F016691	N/A	MKVGSFVECVDDKFSSAQLEKLVKIPKDGNYYTIRDIVDYPDLGRTGVRLEEISNPPVEMQGSLDEPTFNIFRFRELEIPPPLEMEIREALDNDLGLEIIEEDDGLLRRIRN
Ga0211518_100030344	F080615	N/A	MARNKIKESTKEYKRDSKGKMLKQYSWRHYTVHSTSTKELLTYYTNPNFKRKKEMIRLELIKRNAI