Scaffold Ga0211518

Basic Information
Taxon OID	3300020440 Open in IMG/M
Scaffold ID	Ga0211518_10001058 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_E500000178 (ERX555952-ERR599043)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020440 Open in IMG/M

Scaffold ID

Ga0211518_10001058 Open in IMG/M

Source Dataset Name

Marine microbial communities from Tara Oceans - TARA_E500000178 (ERX555952-ERR599043)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

CEA Genoscope

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	22419
Total Scaffold Genes	45 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	29 (64.44%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

22419

Total Scaffold Genes

45 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

29 (64.44%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_025
Coordinates	Lat. (^o)	39.3599	Long. (^o)	19.4084	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

TARA_025

Coordinates

Lat. (^o)

39.3599

Long. (^o)

19.4084

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002495	Metagenome / Metatranscriptome	554	Y
F002586	Metagenome	546	N
F003365	Metagenome / Metatranscriptome	491	Y
F005537	Metagenome / Metatranscriptome	397	Y
F008307	Metagenome / Metatranscriptome	335	Y
F043149	Metagenome / Metatranscriptome	157	N
F058445	Metagenome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211518_1000105819	F058445	AGAAG	MFNESTKEGKNMSYVYDDFGNLKDNCLIVTPTSKPRNIRGLRSDANWQIEAVSYDKKNNLNFNVNCVFWTKKEALSFLKTGVHNCSVTNQPLYKIKQ
Ga0211518_1000105825	F002586	N/A	MKITLDSNDVELAYTTAQRRFIGNVRMNKGFSYGYNKNLKNQLYDGFLGAMGEIVYAKATNSYFNGSYTDNNEFYSESDFQDNIEIRTQDKKSYNFLIIRPGEKQGKYFLIIKENDRDYNFTIKGWFLYKDDLPPEKLSNFGYQDRPAAYKIEINELTPMEEDVRQDKF
Ga0211518_1000105827	F003365	GAG	MLKQIGKEWKKKEEGGTFTADHLSPSQLNMNIDQWHYNYNVLTAAERKKLPANLKMIFGGLVGQGLQDLITEKLTIQELMKGKK
Ga0211518_1000105830	F002495	GGAGG	MSNNGSGKQKDWILFPYDANNEKAIKIDFSGNVILDNGAKGTILGVKGQSKDGNTKFLKIFAQVGVVFKGDDKFTGEMNYAEAGGHKGLIGWLNDSGNILSGYKNEPRPKQAKAQSKEIP
Ga0211518_1000105832	F005537	AGGA	MSDNVKFINELERLLNQKQNDYGDFDHTSYVMVGILEKYLSVHNNVEVKVPLKLFGLFMIFLKCWRVMQSKEYKKDTFDDINGYTELLRRLTLNEQNKG
Ga0211518_1000105834	F008307	GGA	MVKVIKSSDVELAANFEEVFDGATVQEATEKAYNQKMPSESAKVNITDTRFIKANIKVVGGENDESKK
Ga0211518_1000105835	F043149	GGAG	MSLRNSNIRLYTKLDKAHKKIFGAKDKGRQCVHTLKAFKEYNQLYRRIVEAENKDARFLY

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0211518_10001058

Overview

Ecosystem & Geography

Associated Families

Sequences