NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211518_10000761

Scaffold Ga0211518_10000761


Overview

Basic Information
Taxon OID3300020440 Open in IMG/M
Scaffold IDGa0211518_10000761 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_E500000178 (ERX555952-ERR599043)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)26402
Total Scaffold Genes37 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (18.92%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_025
CoordinatesLat. (o)39.3599Long. (o)19.4084Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009463Metagenome / Metatranscriptome317Y
F012129Metagenome / Metatranscriptome283Y
F077193Metagenome117N

Sequences

Protein IDFamilyRBSSequence
Ga0211518_1000076110F077193N/AMTHLESLHLRYKQLDQELKALETRENRIYYRGENQKKLMLKKAFESFSNDKFDIETSETRVSLVPKGDKYHTLVEYLFDTRWKSEHGERIEYSKINHNGSYFYNNQENRPNFNQALVEAEYRMAFIRIAVEKDKQIQADWLLIDDRYAQLTSKFWDSKRELRKAISEVSLDISKLEEQAEMDKLENENGISFESKNDYSLPRLDVRHDWEISQIKNIRVVGKTPSGKSVDLQVTKKWSRYDNEKDQYIDEDKVEVFAKVRFDKVKSLLRNARYNELIVE
Ga0211518_1000076113F012129N/AMSKDPLNNLKQSLDQLLQADTSVKRKNKQIFEQKKDLFISLINQFEISITRSYLMEKDFNVNLSKYDESFLQIIDSLLLLTFGKEVYEILSFYFYERYNPDGSKNTLTIEESGEEVDISTAEDLFQVIVNLKPNIFNAKG
Ga0211518_1000076115F009463N/AMEKVQLTDILEGDYTKDVNITNDTSMYNPLNEDDQDGTLKYTTNIDGRGYKVSFDVNKNPTKKGIKVKFFPLDDNGNEIETPSPEQIAQLQNDVATKLAPKFNEFRLEFDEDEDAPERNVAAFQVPLSSFVSFVANVVFKK
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