Scaffold Ga0211518

Basic Information
Taxon OID	3300020440 Open in IMG/M
Scaffold ID	Ga0211518_10000686 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_E500000178 (ERX555952-ERR599043)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020440 Open in IMG/M

Scaffold ID

Ga0211518_10000686 Open in IMG/M

Source Dataset Name

Marine microbial communities from Tara Oceans - TARA_E500000178 (ERX555952-ERR599043)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

CEA Genoscope

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	27769
Total Scaffold Genes	46 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	38 (82.61%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

27769

Total Scaffold Genes

46 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

38 (82.61%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_025
Coordinates	Lat. (^o)	39.3599	Long. (^o)	19.4084	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

TARA_025

Coordinates

Lat. (^o)

39.3599

Long. (^o)

19.4084

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013477	Metagenome / Metatranscriptome	271	Y
F018697	Metagenome / Metatranscriptome	233	Y
F021673	Metagenome / Metatranscriptome	218	N
F049283	Metagenome / Metatranscriptome	147	N
F072845	Metagenome / Metatranscriptome	121	N
F090257	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211518_1000068633	F021673	GAG	MKRVYSVTICGKNDCVSMTEAEASMLAMKYGKHLVMYDMTKRHGVKPEFLHKELRREQREWRGTSFSKGIAIGSFGGAAPVNWTYDDLINVNLEALNG
Ga0211518_1000068637	F072845	GAG	MSGEKLTINDDGLVTEIEVDDYDFGSGYTYHPSPYVLPPSEDIATSNIFSMSHDIDGKMRITGEDADIEINGISLKDTLHNLHERMAILEPNPALEAEFKELRDVRQKYIELERNLLEKKQMWDTLNRDD
Ga0211518_1000068640	F090257	AGG	MFKKKEDLDQLFGANESISALVVAICATLFDNGVRVIPIGGLMRLLGVPKEKAEKHDDKAFELGDDFYDQLEEMGFEKIADAELQLTNKKTIH
Ga0211518_1000068643	F049283	AGG	MYSFKVGKMKDVQKVVHTAYDIWAAAVYAHRINKGYYKEDEFNTDGECVRESNRIVARNALALGGKISVEDRCKGAEVRKFISSRLMVTAITRKLNDFQKSLSRAVELDEFVVPQDRMLIGIVNSQIAQYERAMREEQLTKDYVYGVFGKIKERLDVELKPVSRFWLTDWGTFRYNAITKDGYKTSFYYRDKLEIGDAVKVRGTVSKHTNDTTTINRVKVL
Ga0211518_1000068646	F018697	N/A	NGFTQIVTRYLNKRHGMQFEKFYERLLDWGLENKNCAAHKWLKKWQGYGERLEFNMFLAGLTYAPVLEDLGVTNRSQTFQDILTVAREFAPNDPLLQDVMIIQERQQTIFAHDPTTEITLKANVFEYALGKEELNIQPTHYKIHRAYPPKATDPTWVVWMNSTRKNKKWQARVEYSTEKTTLFLEKG
Ga0211518_100006869	F013477	AGGAGG	MTNKFDWPRMYKDEEHLEREAQSCVEHAISTHFDIEDIDELTQEQWDEIMAWREENVSEYSPMYGGFADVYNMWEMNNEDV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0211518_10000686

Overview

Ecosystem & Geography

Associated Families

Sequences