Scaffold Ga0211518_10000312

Overview

Basic Information

• Taxon OID: 3300020440
• Scaffold ID: Ga0211518_10000312
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_E500000178 (ERX555952-ERR599043)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 40220
• Total Scaffold Genes: 50
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (52.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_025
• Coordinates
  • Lat. (^o): 39.3599
  • Long. (^o): 19.4084
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011354	Metagenome / Metatranscriptome	292	Y
F017577	Metagenome / Metatranscriptome	240	Y
F020000	Metagenome / Metatranscriptome	226	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211518_1000031215	F020000	GAGG	MAAVAITALDRFTNVTETTGAVMSSVDDYLEVPAHSSSYSFAANVTSSANFTLALEANFNGNGNWFTVDTSKTINSAGQYVYFYDGKPAARIRMRIAAISSGTVSLTPHIVVAYHG
Ga0211518_1000031216	F011354	N/A	MGTRIIPGFCTHLEVDAESRTTGASFAFMTPQDPIDFGALMTRLASGIEVMVEVEDEDDD
Ga0211518_1000031232	F017577	GGA	MATTFPSIEPTGRSFTAPSWATTTQASQSGVITRRLWGSRPSRATLNLQFNNISDTNVSAILSAYNTAQGPVDSLTLPDVLFNGADATLKTWLNNSATGAGLLWCFSEGSPPSVESTAPGRSNVTVRLTAELRMS