Scaffold Ga0211558_10226410

Overview

Basic Information

• Taxon OID: 3300020439
• Scaffold ID: Ga0211558_10226410
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001939 (ERX556062-ERR599029)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 887
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_141
• Coordinates
  • Lat. (^o): 9.846
  • Long. (^o): 80.0607
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F078594	Metagenome	116	Y
F081429	Metagenome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211558_102264101	F081429	GGTGG	MIDRITELLNELEQELNDGYNTLPDYQANDEGKTYVNGAQATLYEL
Ga0211558_102264104	F078594	N/A	KILGRYVIGEVIVPFLIIFEKLIKRLRLFLFNYKMDIYYHYKDRQNTEFLNHIKQQINYGKENL