Scaffold Ga0211558_10217618

Overview

Basic Information

• Taxon OID: 3300020439
• Scaffold ID: Ga0211558_10217618
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001939 (ERX556062-ERR599029)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 908
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_141
• Coordinates
  • Lat. (^o): 9.846
  • Long. (^o): 80.0607
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002318	Metagenome / Metatranscriptome	571	Y
F043980	Metagenome	155	Y
F066150	Metagenome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211558_102176182	F002318	AGGAG	MKNKEYKSITNLLENQNKGKKFFSFMDMEDAEIRKLEKVVPLPKKYFNNIIKFIKGDK
Ga0211558_102176183	F066150	N/A	MKILANYELKDMGTPIKETSCWLFFEKGKIAKHTISRFHYKSEIDKFRKELTFAKYKPISNSIN
Ga0211558_102176184	F043980	N/A	PITTEQEKVKYIFDRFYSEYGWNIERVGKQKAMEEWLSGLALNIEYYDDAIVDLAIKLGSINSNPSNKLRNKVSQNYFNFMANVILGFETFEIKEWLLKNNKYIGN