Scaffold Ga0211558_10104457

Overview

Basic Information

• Taxon OID: 3300020439
• Scaffold ID: Ga0211558_10104457
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001939 (ERX556062-ERR599029)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1382
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_141
• Coordinates
  • Lat. (^o): 9.846
  • Long. (^o): 80.0607
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006217	Metagenome	378	Y
F015102	Metagenome / Metatranscriptome	257	Y
F027536	Metagenome	194	Y
F053632	Metagenome	141	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211558_101044572	F053632	GAGG	MKLYKNSNGVWAGTQADARKMCGKGYQTVDVPTDKPSLLRFLNANKVGTSYTSNDKEFEPVYAPDTDLDKKALSYFEWGYDELTKGAYELGKEYIRKALLYQKTHNMHEEDTNA
Ga0211558_101044573	F006217	AGGAGG	MLEVLLAIAATQPDDNAITKYCMSKFEHWTDRAACGQQLRQIERELEVEALRKFLKENPHYRYPGMALPNGKIKPLDVCWGSDKTYGTSKGRRC
Ga0211558_101044575	F027536	GGAGG	MRVYNYKVTPIDRVINECKRKADDAWWDGNDDEARLHEQEAKLHEEDRDERGYQWVPNF
Ga0211558_101044576	F015102	N/A	MYMQTSEHDDTEDTNAPFDDVTHWVGNLPSKDTNSTERPVKRYSWWQTKSNVLRSKLGVETKRED