Scaffold Ga0211558_10100665

Overview

Basic Information

• Taxon OID: 3300020439
• Scaffold ID: Ga0211558_10100665
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001939 (ERX556062-ERR599029)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1413
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_141
• Coordinates
  • Lat. (^o): 9.846
  • Long. (^o): 80.0607
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021206	Metagenome	220	Y
F047360	Metagenome	150	Y
F058518	Metagenome	135	Y
F089518	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211558_101006651	F021206	N/A	MTVTLNQLLEMENVLATRKIPSDIREVTNWKYFSESKQKWITLGEQPLHYVLRILTKKDFKIFMKGE
Ga0211558_101006652	F047360	GGAG	MRFECEIDMSNHAFAHDPHYELSKIIKTISHDVDDFVCISRTKILRDTNGNKIGTWKIIG
Ga0211558_101006654	F089518	AGTAGG	MEYVIHISKKGGECFAYHSTKDKSELDRLVSKYLRMKGITIEVKKRFLS
Ga0211558_101006655	F058518	AGG	MRYKDITIEADDLECDETDTIYKAIKNHILDVGIATPKTLTGFNWRLDVRMRMDNYET