Scaffold Ga0211558_10086408

Overview

Basic Information

• Taxon OID: 3300020439
• Scaffold ID: Ga0211558_10086408
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001939 (ERX556062-ERR599029)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1541
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_141
• Coordinates
  • Lat. (^o): 9.846
  • Long. (^o): 80.0607
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019151	Metagenome	231	Y
F024570	Metagenome	205	Y
F054095	Metagenome	140	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211558_100864082	F024570	AGGA	MNYVAYEIRMTKETPTGTRHLVRCNRLGKYAITSWVGSTGASMGTVECQGNYDYVMKKWKKIVGKYVPVT
Ga0211558_100864084	F019151	AGGA	MIVADERAKDGLELFEIDGLQAFEMKNETLKMCADDDGTLWDSVRGLEVKDADGNVVFSLSWSETGVCGMLHDEDFTVELAEEF
Ga0211558_100864086	F054095	AGGAG	MIPQWKMNGKDMRFNGEIEIGVVEVRDLFDDLVVTLWVDQEESGSIAVKTLGGVGNGRYSVQILPREKPVEEGEEWKEL