Scaffold Ga0211558_10068311

Overview

Basic Information

• Taxon OID: 3300020439
• Scaffold ID: Ga0211558_10068311
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001939 (ERX556062-ERR599029)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1757
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_141
• Coordinates
  • Lat. (^o): 9.846
  • Long. (^o): 80.0607
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013187	Metagenome	273	Y
F021207	Metagenome	220	Y
F105326	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211558_100683113	F021207	N/A	MSKRFKQVNIQHFAILVQDIDISKYTQKEYVEIVEEIYMSIFRHNTDGDFVVETLPNEKGNWKVHKPSATKEEVMELINQGKVKWDKNAI
Ga0211558_100683114	F105326	AGG	MGQERNLTPTQHWELHQGLWYMLGCDMELKQKNKTTVIYVDNKSKRQYTYSALGFIKEKSYANKKY
Ga0211558_100683115	F013187	N/A	MPTKNIKKKPKRNTWVYIYGDEMLEIWEHFGIDFPNPDDRMKLKFVKYETKEMQDG